PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G005000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 209aa    MW: 22310.3 Da    PI: 7.2604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G005000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.3e-40221161100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++     r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++q
  Sobic.008G005000.1.p  22 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQQ-----RADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQ 105
                           7*********************************************98.....************************************ PP

                DUF260  90 lkaelallkee 100
                           l+++lal+k+e
  Sobic.008G005000.1.p 106 LQVQLALAKAE 116
                           *******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.92221117IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3922114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAGSGSGSGS GSSSSSSSSS PPCASCKLLR RRCTQECVFA PYFPPEDPHK FAIVHKVFGA  60
SNVSKMLQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ QQVSQLQVQL ALAKAEILCV  120
QMQHDESASA AAAPAPAKQQ LHHHHHQQEE MECEAYGSLL VQNGLMMNTL NSTGAVHHQQ  180
QMLGSFGSAG NTAMMLQEAC LKKETLWA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008522e-77FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679329.11e-101PREDICTED: LOB domain-containing protein 12-like
RefseqXP_008679328.11e-101PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-63LBD12_ARATH; LOB domain-containing protein 12
TrEMBLK7V1I71e-104K7V1I7_MAIZE; Putative LOB domain-containing family protein
STRINGGRMZM2G025989_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-52LBD family protein